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EEG Pipeline

BESA (Updated 2023) 

1

Collect Data

There are hundreds of sites with free, downloadable EEG data that can be imported into BESA.

2

Import Data

After choosing a dataset, isolate the raw EEG data from the metadata and other contextual information about the experiment.

3

Re-reference Data

You need to convert the data to an average reference.

4

Set Channel Locations

Select the files that specifies the channel locations.

5

Delete or Interpolate Bad Channels

You may want to delete channels that are too noisy, such as the ones around the face.

6

Filtering

We use filters to take out signals that are definitley not brain data. You need to filter out the very low (<0.01-0.1 Hz) and very high frequencies (>50-100 Hz), as well as the 60 Hz line noise from the ambient electrical wires.

7

Run ICA

ICA is used to separate out the data into its various signal sources, which are both neural and non-neural.

8

Epoching

For each stimulus, we want to extract a segment of data just before and just after the stimulus.

9

Baseline Removal

The signal recorded just before the stimulus is considered the baseline. This is comprised of neural activity that is not in response to the stimulus as well as noise. This baseline is subtracted from the entire epoch, leaving the neural activity that occured in response to the stimulus.

10

Component Rejection

Once you've run ICA on a dataset, it is possible to reject non-neural signal sources. This section explains how to do that and explains the Sasica plug in.

11

Sorting by Stimulus Type

Separating the data for each stimulus type into its own file.

12

Averaging Trials

Separating the data for each stimulus type into its own file.

13

Check the Data

Head Plots

Plot the head maps for the time ranges of interest

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Waveforms

Plot the waveforms of the averaged data

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Grand Averaging

Averaging all of the data of one type together (such as all face data / scene data)

14

Analyze the Data

Average Amplitudes

Wavelet Analysis

Fourier Transforms

Phase Coherence

Resources

Filename Key
Automation Scripts
EEGLAB Scripts
Other
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